SRY
Testes Determing Factor



 
 
 
 

The Sex-Determining Region (SRY) is a gene that encodes a transcription factor that is a member of the high mobility group HMG-box family of DNA binding proteins.The gene is located on the short arm of the Y chromosome and has a gene map locus - Yp11.3.Common synonyms of the gene name are Testis Determining Factor (TDF) and Testis Determining Factor on Y (TDY).
 
The Y chromosome currently has 77 genes mapped in its cytogenetic map (OMIM). The SRY protein is Y-linked and encoded at its map locus of Yp11.3 in between the genes for RPS4Y: ribosomal protein S4 and another protein product sequence that has an unknown function.
 
The main function of the SRY protein is to initiate male sex determination as a transcriptional activator, which regulates a genetic switch in male development.  The SRY HMG box recognizes DNA by partial intercalation in the minor groove.  The SRY protein then binds to the DNA and distorts its shape (SRY protein in action).  In doing so, it regulates genes that control the development of the testes (NCBI).


           The Amino Acid Sequence

           1           11          21          31          41          51
    1 MQSYASAMLS  VFNSDDYSPA  VQENIPALRR  SSSFLCTESC  NSKYQCETGE NSKGNVQDRV   60
   61 KRPMNAFIVW  SRDQRRKMAL  ENPRMRNSEI  SKQLGYQWKM  LTEAEKWPFF QEAQKLQAMH   120
  121 REKYPNYKYR  PRRKAKMLPK  NCSLLPADPA  SVLCSEVQLD  NRLYRDDCTK ATHSRMEHQL   180
  181 GHLPPINAAS  SPQQRDRYSH  WTKL

 *The letters in red are the amino acids found in the HMG box.  (60-128)



 
 

 
 

    The SRY Protein In Action
 

 
 
 
The SRY(green) binds to DNA (pink) and distorts its shape. After binding, the SRY protein regulates genes that control the development of the testes.
 

There are several types of mutations that can result from mutations at the SRY gene and result in many different phenotypic variants. Variants are caused by mutations, or changes in the genetic code that lead to the coding of different amino acids.  A one-letter change in the base pair sequence leads to a chain of events that first codes for an irregular amino acid, changes the shape of a normal SRY protein, and ultimately has an effect in the development of an individual.  A table with the number of currenlty discovered genetic variants in the SRY protein are displayed here:



 
 
  VARIANT      60     60       V -> A (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003718.
  VARIANT      60     60       V -> L (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003719.
  VARIANT      62     62       R -> G (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003720.
  VARIANT      64     64       M -> I (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003721.
  VARIANT      68     68       I -> T (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003722.
  VARIANT      78     78       M -> T (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003723.
  VARIANT      90     90       I -> M (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003724.
  VARIANT      91     91       S -> G (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003725.
  VARIANT      95     95       G -> R (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003726.
  VARIANT     101    101       L -> H (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003727.
  VARIANT     106    106       K -> I (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003728.
  VARIANT     108    108       P -> R (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003729.
  VARIANT     109    109       F -> S (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003730.
  VARIANT     113    113       A -> T (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003731.
  VARIANT     125    125       P -> L (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003732.
  VARIANT     127    127       Y -> C (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003733.
  VARIANT     133    133       R -> W (IN 46,XY GONADAL DYSGENESIS).
                               /FTId=VAR_003734.




 
 

In the variants above, each of the numbers displayed indicates the exact location of a variant base pair.  As true with any protein coding process, a single substitution in any single base pair sequence for the SRY protein can have profound consequences in the development of an individual.  In the SRY protein, a single variant occuring at the 60th bp causes an amino acid change from the normal amino acid Valine (V) to the amnio acid Anlanine (A).  Phenyotypically, this change in amino acids leads to developmental defects on the individual.  In research, this variant occurence was found  in a  three-generation family where all XY individuals have this particular single base-pair substitution.  The variant resulted in three individuals that were XY sex-reversed females, and two were XY males (Vilain E...).
 

The most common type of mutation that occurs from genetic variation in the SRY region is Gonadal dysgenesis, or Swyer Syndrome.  Individuals with Gonadal dysgenesis suffer from rapid and early degeneration of their gonads.  Adults have what are known as “streak gonads” that consist prominently of fibrous tissue and variable amounts of ovarian stroma (OMIM).  This condition in particular has many variants on the way it is expressed in affected individuals.  Most individuals exhibit various types of sexual development, but never develop secondary sexual characteristics when puberty is reached.  The genotypes are typically 46,XY females who either have partial or complete Gonadal dysgenesis.
 


The SRY protein is somewhat of a special protein - it has only one exon.  Evidence for this finding has been studied and published in Genomics "Evidence that the SRY protein is encoded by a single exon on the human Y chromosome."  (Genomics 736-739).   Its coding sequence codes for 204 amino acids from a mRNA sequence that is 897 base pairs long- distributed in the following among the four nucleotides:


BASE COUNT     264 a    207 c    208 g    218 t
The 897 Base Pair Nucleotide Sequence
  1 gttgaggggg tgttgagggc ggagaaatgc aagtttcatt acaaaagtta acgtaacaaa
 61 gaatctggta gaagtgagtt ttggatagta aaataagttt cgaactctgg cacctttcaa
121 ttttgtcgca ctctccttgt ttttgacaat gcaatcatat gcttctgcta tgttaagcgt
181 attcaacagc gatgattaca gtccagctgt gcaagagaat attcccgctc tccggagaag
241 ctcttccttc ctttgcactg aaagctgtaa ctctaagtat cagtgtgaaa cgggagaaaa
301 cagtaaaggc aacgtccagg atagagtgaa gcgacccatg aacgcattca tcgtgtggtc
361 tcgcgatcag aggcgcaaga tggctctaga gaatcccaga atgcgaaact cagagatcag
421 caagcagctg ggataccagt ggaaaatgct tactgaagcc gaaaaatggc cattcttcca
481 ggaggcacag aaattacagg ccatgcacag agagaaatac ccgaattata agtatcgacc
541 tcgtcggaag gcgaagatgc tgccgaagaa ttgcagtttg cttcccgcag atcccgcttc
601 ggtactctgc agcgaagtgc aactggacaa caggttgtac agggatgact gtacgaaagc
661 cacacactca agaatggagc accagctagg ccacttaccg cccatcaacg cagccagctc
721 accgcagcaa cgggaccgct acagccactg gacaaagctg taggacaatc gggtaacatt
781 ggctacaaag acctacctag atgctccttt ttacgataac ttacagccct cactttctta
841 tgtttagttt caatattgtt ttcttttctc tggctaataa aggccttatt catttca
  * The start codon is indicated in green and the stop codon is indicated in red.


 
 

Since being mapped in 1989, the SRY gene has been the focus of many research projects.  Some of the work that has become the most well-known confirms the function of the SRY protien as a memeber of the HMG-box family proteins.  For example, a mutational analysis of the SRY gene in studied XY females noted that all 11 of the mutations described at that time were within the DNA-binding HMG-box region of the protein (Hawkins).  In 1996,  it was proposed that only the HMG box region of the SRY gene has been conserved through evolution, suggested that SRY function depends on the HMG box and therefore acts as an architectural transcription factor (Kawakura).  Since then, there have been numerous studies of individuals with Gonadal dysgenesis, and have added to the evidence of the mechanism in which the SRY functions.
 
 




Works Cited






1) Hawkins, J. R. :

        Mutational analysis of SRY in XY females. Hum. Mutat. 2: 347-350, 1993.
        PubMed ID : 8257986

2) Kawakura, K.; Miyake, Y.-I.; Murakami, R.-K.; Kondoh, S.; Hirata, T.-I.; Kaneda, Y. :

        Deletion of the SRY region on the Y chromosome (XY female).  Cytogenet. Cell Genet. 72: 183-184, 1996.
        PubMed ID : 8978769

3) Vilain E, McElreavey K, Jaubert F, Raymond JP, Richaud F, Fellous M
        Familial case with sequence variant in the testis-determining region associated with two sex phenotypes.
        PubMed ID: 1570829

4) NCBI.  Sex Determining Region Y.

Protein Link:

        <http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=11418297&db=Protein&dopt=GenPept>.
DNA Sequence (non-template strand) Link:
        <http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=11418296&db=Nucleotide&dopt=GenBank>
Function Link:
        <http://www.ncbi.nlm.nih.gov/genome/guide/HsChrY.shtml>
5) OMIM.  SRY
        Link: <http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=480000>
6) Swiss-Prot  Sex determining region:
        Link: <http://www.expasy.ch/cgi-bin/sprot-search-de>